Shared_fusions

Quickly find shared fusions between species.

Parameters

Parameters	Standards and instructions
blockinfo	Type: file | Default: - blockinfo.csv filtered according to certain conditions ‘-c’
lens1	Type: file | Default: none Lens file and new lens file created by this program.
lens2	Type: file | Default: none Lens file and new lens file created by this program.
ancestor_left	Type: file | Default: none Ancestor location file.
ancestor_top	Type: file | Default: none Ancestor location file.
classid	Type: str | Default: class1,class2 The class name of the grouping according to the divided ancestral area.
limit_length	Type: int | Default: 5 Show the minimum length of blocks.
filtered_blockinfo	Type: file | Default: * .csv blockinfo.csv filtered by this program.

Use command to enter the folder wgdi -sf ? >> total.conf Take out the parameter file.

[shared_fusion]
blockinfo = block information (*.csv)
lens1 = lens file, new lens file
lens2 =  lens file,  new lens file
ancestor_left = ancestor file
ancestor_top = ancestor file
classid = class1,class2
limit_length = 5
filtered_blockinfo = result blockinfo (.csv)

Quick start

The original results are easily accessible at wgdi-example