Polyploid classification

Polyploid distinguish among subgenomes.

Parameters

Parameters	Standards and instructions
blockinfo	Type: file | Default: - Output result of parameter bi
ancestor_left	Type: file | Default: none The ancestral chromosome region of the species on the left of dotplot.
ancestor_top	Type: file | Default: none The ancestral chromosome region of the species on the top of dotplot.
diff	Type: float | Default: 0.05 More than this value is considered a significant difference.
classid	Type: str | Default: class1,class2 The class name of the grouping according to the divided ancestral area.
savefile	Type: file | Default: * .csv The resulting file.

Use command to enter the folder wgdi -pc ? >> total.conf Take out the parameter file.

[polyploidy classification]
blockinfo = block information (*.csv)
ancestor_left = file
ancestor_top = file
diff = 0.05
classid = class1,class2
savefile = result file(.csv)

Quick start

The original results are easily accessible at wgdi-example