BlockKs

blockks is show Ks of blocks in a dotplot.

Parameters

Parameters	Standards and instructions
blockinfo	Type: file | Default: - Output result of parameter bi
pvalue	Type: float | Default: 1 Evaluate the compactness and uniqueness of collinear blocks, the range is 0-1, the better collinearity range is 0-0.2.
tandem	Type: bool | Default: false Whether to display the collinearity block that may be generated by tandem.
tandem_length	Type: int | Default: 200 If tandem=true, the maximum range of tandem influence.
area	Type: str Default: -1,3 Show the range of ks.
block_length	Type: int | Default: 5 Show the minimum length of a collinear block.
position	Type: {order, start , end } | Default: order The position of a gene corresponds to the gff file.
markersize	Type: float | Default: 0.5 The size of the point in the plot.
figsize	Type: int,int | Default: 10,10 Control the proportion of the size of the saved picture.
savefig	Type: {*. png,*. pdf} | Default: *. png Save pictures support png, pdf, svg formats.

Use command to enter the folder wgdi -bk ? > blockks.conf Take out the parameter file.

[blockks]
lens1 = lens1 file
lens2 = lens2 file
genome1_name =  Genome1 name
genome2_name =  Genome2 name
blockinfo = block information
pvalue = 0.05
tandem = true
tandem_length = 200
markersize = 1
area = 0,2
block_length =  minimum length
figsize = 8,8
savefig = save image

Quick start

After the parameters are modified properly, then run wgdi -bk total.conf

Example

The original results are easily accessible at wgdi-example