Changelog
0.6.1
Fixed issue with alignment (-a). Only version 0.6.0 has this bug.
0.6.0
Fixed issue with improved collinearity (-icl).
Added a parameter ‘tandem_ratio’ to blockinfo (-bi).
0.5.9
Update the improved collinearity (-icl). Faster than before, but lower than MCscanX, JCVI.
Fixed issue with ancestral karyotype repertoire (-akr).
0.5.8
Fixed issue with gene names (-ks).
0.5.7
Fixed issue with chromosome order (-ak).
Fixed issue with gene names (-ks). This version is not fixed, please install the latest version.
0.5.5 and 0.5.6
Add ancestral karyotype (-ak)
Add ancestral karyotype repertoire (-akr)
0.5.4
Improved the alignmenttrees (-km) effect.
little change (-at).
0.5.3
Fixed legend issue with (-kf).
Fixed calculate Ks issue with (-ks).
Improved the karyotype_mapping (-km) effect.
Improved the alignmenttrees (-at) effect.
0.5.2
Fixed some bugs.
0.5.1
Fixed the error of the command (-conf).
Improved the karyotype_mapping (-km) effect.
Added the available data set of alignmenttree (-at). Low copy data set (for example, single-copy_groups.tsv of sonicparanoid2 software).
0.4.9
The latest version adds karyotype_mapping (-km) and karyotype (-k) display.
The latest version changes the calculation of extracting pvalue from collinearity (-icl), making this parameter more sensitive. Therefore, it is recommended to set to 0.2 instead of 0.05.
The latest version has also changed the drawing display of ksfigure (-kf) to make it more beautiful.