Changelog

0.6.1

  • Fixed issue with alignment (-a). Only version 0.6.0 has this bug.

0.6.0

  • Fixed issue with improved collinearity (-icl).

  • Added a parameter ‘tandem_ratio’ to blockinfo (-bi).

0.5.9

  • Update the improved collinearity (-icl). Faster than before, but lower than MCscanX, JCVI.

  • Fixed issue with ancestral karyotype repertoire (-akr).

0.5.8

  • Fixed issue with gene names (-ks).

0.5.7

  • Fixed issue with chromosome order (-ak).

  • Fixed issue with gene names (-ks). This version is not fixed, please install the latest version.

0.5.5 and 0.5.6

  • Add ancestral karyotype (-ak)

  • Add ancestral karyotype repertoire (-akr)

0.5.4

  • Improved the alignmenttrees (-km) effect.

  • little change (-at).

0.5.3

  • Fixed legend issue with (-kf).

  • Fixed calculate Ks issue with (-ks).

  • Improved the karyotype_mapping (-km) effect.

  • Improved the alignmenttrees (-at) effect.

0.5.2

  • Fixed some bugs.

0.5.1

  • Fixed the error of the command (-conf).

  • Improved the karyotype_mapping (-km) effect.

  • Added the available data set of alignmenttree (-at). Low copy data set (for example, single-copy_groups.tsv of sonicparanoid2 software).

0.4.9

  • The latest version adds karyotype_mapping (-km) and karyotype (-k) display.

  • The latest version changes the calculation of extracting pvalue from collinearity (-icl), making this parameter more sensitive. Therefore, it is recommended to set to 0.2 instead of 0.05.

  • The latest version has also changed the drawing display of ksfigure (-kf) to make it more beautiful.