KsPeaks

kspeaks is a simple way to get ks peaks.

Parameters	Standards and instructions
blockinfo	Type: file | Default: - Output result of parameter bi
pvalue	Type: float | Default: 0.05 Evaluate the compactness and uniqueness of collinear blocks, the range is 0-1, the better collinearity range is 0-0.2.
tandem	Type:str | Default: true The criterion is that there are no more than 200 genes with a difference in genetic location.
block_length	Type: int | Default: 5 Minimum length of collinear blocks.
ks_area	Type: str | Default: 0,10 Show the range of ks.
multiple	Type: int | Default: 1 The best number of homologous genes shown with red dots.
homo	Type: int [1-5] Default: 1 Evaluate the ratio of the best homologous gene pairs of collinearity block, with a range of -1, 1.
fontsize	Type: str Default: 9 The size of the font.
area	Type: str Default: 0,3 Show the range of ks.
figsize	Type: int,int | Default: 10,10 Control the proportion of the size of the saved picture.
savefig	Type: {*. png, *. pdf, *. svg} | Default: *. png Save pictures support png, pdf, svg formats.
savefile	Type: file | Default: * .csv The resulting file.

Parameters

Use command to enter the folder wgdi -kp ? >> total.conf Take out the parameter file.:

[kspeaks]

 blockinfo = block information
 pvalue = 0.05
 tandem = true
 block_ length = int number
 ks_area = 0,10
 multiple = 1
 homo = 0,1
 fontsize = 9
 area = 0,3
 figsize = 10,6.18
 savefig = saving image
 savefile = ks medain savefile

Quick start

After the parameters are modified properly, then run wgdi -kp total.conf

Example

The original results are easily accessible at wgdi-example