Correspondence

Extract event-related genomic alignment.

Parameters

Parameters	Standards and instructions
blockinfo	Type: file | Default: - Output result of parameter bi
tandem	Type: bool | Default: false Whether to display the collinearity block that may be generated by tandem.
tandem_length	Type: int | Default: 200 If tandem=true, the maximum range of tandem influence.
pvalue	Type: float | Default: 1 Evaluate the compactness and uniqueness of collinear blocks, the range is 0-1, the better collinearity range is 0-0.2.
block_length	Type: int | Default: 5 Show the minimum length of a collinear block.
multiple	Type: int | Default: 1 The best number of homologous genes shown with red dots.
homo	Type: int [1-5] Default: 1 Evaluate the ratio of the best homologous gene pairs of collinearity block, with a range of -1, 1.
savefile	Type: file | Default: * .csv The resulting file.

Use command to enter the folder wgdi -c ? >> total.conf Take out the parameter file.

[correspondence]
blockinfo =  blockinfo file(.csv)
lens1 = lens1 file
lens2 = lens2 file
tandem = (true/false)
tandem_length = 200
pvalue = 0.2
block_length = 5
multiple  = 1
homo = 0,1
savefile = savefile(.csv)

Quick start

The original results are easily accessible at wgdi-example