Karyotype

Show genome evolution from reconstructed ancestors.

Parameters

Parameters	Standards and instructions
ancestor	Type: file | Default: - The specie’s ancestral chromosome regions, result of parameter ‘-km’.
width	Type: float | Default: 0.5 The width of the chromosomes in the figure.
figsize	Type: int,int | Default: 10,10 Control the proportion of the size of the saved picture.
savefile	Type: file | Default: * .csv The resulting file.

Use command to enter the folder wgdi -k ? >> total.conf Take out the parameter file.

[karyotype]
ancestor = ancestor chromosome file
width = 0.5
figsize = 10,6.18
savefig = save image(.png, .pdf, .svg)

Quick start

The original results are easily accessible at wgdi-example