Fusion_positions_database

Determine whether these fusion events occur in other genomes.

Parameters

Parameters	Standards and instructions
pep	Type: file | Default: - A protein file for a genome.
fusion_positions	Type: file | Default: none See https://wgdi.readthedocs.io/en/latest/usage.html.
NumGeneSetsPerSide	Type: int | Default: 100 The number of genes within a single synteny block that spans across both sides of the fusion breakpoints.
ancestor_left	Type: file | Default: none Result file.
ancestor_lens	Type: file | Default: none Result file.
ancestor_pep	Type: file | Default: none Result file.
ancestor_file	Type: file | Default: none Result file.

Use command to enter the folder wgdi -fpd ? >> total.conf Take out the parameter file.

[fusion_positions_database]
pep = pep file
gff = gff file
fusion_positions = fusion_positions file
NumGeneSetsPerSide = 100
ancestor_gff =  result file
ancestor_lens =  result file
ancestor_pep =  result file
ancestor_file =  result file

Quick start

The original results are easily accessible at wgdi-example