Fusions_detection

Extract the fusion positions dataset.

Parameters

Parameters	Standards and instructions
blockinfo	Type: file | Default: none Output result of parameter bi.
ancestor	Type: file | Default: none Ancestor location file.
min_genes_per_side	Type: int | Default: 5 The number of genes spanned by a synteny block on both sides of a breakpoint.
density	Type: float | Default: 0.3 Synteny block density relative to the protochromosome indicates collinearity; values near 1 signify greater clarity.
filtered_blockinfo	Type: file | Default: none blockinfo.csv filtered by this program.

Use command to enter the folder wgdi -fd ? >> total.conf Take out the parameter file.

[fusions_detection]
blockinfo = block information (*.csv)
ancestor = ancestor file
min_genes_per_side = 5
density = 0.3
filtered_blockinfo = result blockinfo (.csv)

Quick start

The original results are easily accessible at wgdi-example