Shared_fusions -------------- Quickly find shared fusions between species. .. rubric:: Parameters .. tabularcolumns:: column spec ========================= ======================================================================== Parameters Standards and instructions ------------------------- ------------------------------------------------------------------------ blockinfo Type: **file** | Default: **-** blockinfo.csv filtered according to certain conditions '-c' ------------------------- ------------------------------------------------------------------------ lens1 Type: **file** | Default: **none** Lens file and new lens file created by this program. ------------------------- ------------------------------------------------------------------------ lens2 Type: **file** | Default: **none** Lens file and new lens file created by this program. ------------------------- ------------------------------------------------------------------------ ancestor_left Type: **file** | Default: **none** Ancestor location file. ------------------------- ------------------------------------------------------------------------ ancestor_top Type: **file** | Default: **none** Ancestor location file. ------------------------- ------------------------------------------------------------------------ classid Type: **str** | Default: **class1,class2** The class name of the grouping according to the divided ancestral area. ------------------------- ------------------------------------------------------------------------ limit_length Type: **int** | Default: **5** Show the minimum length of blocks. ------------------------- ------------------------------------------------------------------------ filtered_blockinfo Type: **file** | Default: \* **.csv** blockinfo.csv filtered by this program. ========================= ======================================================================== Use command to enter the folder ``wgdi -sf ? >> total.conf`` Take out the parameter file. .. code-block:: python [shared_fusion] blockinfo = block information (*.csv) lens1 = lens file, new lens file lens2 = lens file, new lens file ancestor_left = ancestor file ancestor_top = ancestor file classid = class1,class2 limit_length = 5 filtered_blockinfo = result blockinfo (.csv) .. rubric:: Quick start The original results are easily accessible at `wgdi-example `_