Polyploid classification ------------------------ Polyploid distinguish among subgenomes. .. rubric:: Parameters .. tabularcolumns:: column spec ==================== ======================================================================== Parameters Standards and instructions -------------------- ------------------------------------------------------------------------ blockinfo Type: **file** | Default: **-** Output result of parameter `bi` -------------------- ------------------------------------------------------------------------ ancestor_left Type: **file** | Default: **none** The ancestral chromosome region of the species on the left of dotplot. -------------------- ------------------------------------------------------------------------ ancestor_top Type: **file** | Default: **none** The ancestral chromosome region of the species on the top of dotplot. -------------------- ------------------------------------------------------------------------ diff Type: **float** | Default: **0.05** More than this value is considered a significant difference. -------------------- ------------------------------------------------------------------------ classid Type: **str** | Default: **class1,class2** The class name of the grouping according to the divided ancestral area. -------------------- ------------------------------------------------------------------------ same_protochromosome Type: **bool** | Default: **False** A synteny block spans two protochromosomes of the same color. -------------------- ------------------------------------------------------------------------ savefile Type: **file** | Default: \* **.csv** The resulting file. ==================== ======================================================================== Use command to enter the folder ``wgdi -pc ? >> total.conf`` Take out the parameter file. .. code-block:: python [polyploidy classification] blockinfo = block information (*.csv) ancestor_left = file ancestor_top = file diff = 0.05 classid = class1,class2 same_protochromosome = False savefile = result file(.csv) .. rubric:: Quick start The original results are easily accessible at `wgdi-example `_