Fusions_detection ----------------- Extract the fusion positions dataset. .. rubric:: Parameters .. tabularcolumns:: column spec ========================= ======================================================================== Parameters Standards and instructions ------------------------- ------------------------------------------------------------------------ blockinfo Type: **file** | Default: **none** Output result of parameter `bi`. ------------------------- ------------------------------------------------------------------------ ancestor Type: **file** | Default: **none** Ancestor location file. ------------------------- ------------------------------------------------------------------------ min_genes_per_side Type: **int** | Default: **5** The number of genes spanned by a synteny block on both sides of a breakpoint. ------------------------- ------------------------------------------------------------------------ density Type: **float** | Default: **0.3** Synteny block density relative to the protochromosome indicates collinearity; values near 1 signify greater clarity. ------------------------- ------------------------------------------------------------------------ filtered_blockinfo Type: **file** | Default: **none** blockinfo.csv filtered by this program. ========================= ======================================================================== Use command to enter the folder ``wgdi -fd ? >> total.conf`` Take out the parameter file. .. code-block:: python [fusions_detection] blockinfo = block information (*.csv) ancestor = ancestor file min_genes_per_side = 5 density = 0.3 filtered_blockinfo = result blockinfo (.csv) .. rubric:: Quick start The original results are easily accessible at `wgdi-example `_