BlockKs ------- blockks is show Ks of blocks in a dotplot. .. rubric:: Parameters .. tabularcolumns:: column spec ================ ======================================================================== Parameters Standards and instructions ---------------- ------------------------------------------------------------------------ blockinfo Type: **file** | Default: **-** Output result of parameter `bi` ---------------- ------------------------------------------------------------------------ pvalue Type: **float** | Default: **1** Evaluate the compactness and uniqueness of collinear blocks, the range is 0-1, the better collinearity range is 0-0.2. ---------------- ------------------------------------------------------------------------ tandem Type: **bool** | Default: **false** Whether to display the collinearity block that may be generated by tandem. ---------------- ------------------------------------------------------------------------ tandem_length Type: **int** | Default: **200** If tandem=true, the maximum range of tandem influence. ---------------- ------------------------------------------------------------------------ area Type: **str** Default: **-1,3** Show the range of ks. ---------------- ------------------------------------------------------------------------ block_length Type: **int** | Default: **5** Show the minimum length of a collinear block. ---------------- ------------------------------------------------------------------------ position Type: {**order**, **start** , **end** } | Default: **order** The position of a gene corresponds to the gff file. ---------------- ------------------------------------------------------------------------ markersize Type: **float** | Default: **0.5** The size of the point in the plot. ---------------- ------------------------------------------------------------------------ figsize Type: **int,int** | Default: **10,10** Control the proportion of the size of the saved picture. ---------------- ------------------------------------------------------------------------ savefig Type: {\*. **png**,\*. **pdf**} | Default: \*. **png** Save pictures support png, pdf, svg formats. ================ ======================================================================== Use command to enter the folder ``wgdi -bk ? > blockks.conf`` Take out the parameter file. .. code-block:: python [blockks] lens1 = lens1 file lens2 = lens2 file genome1_name = Genome1 name genome2_name = Genome2 name blockinfo = block information pvalue = 0.05 tandem = true tandem_length = 200 markersize = 1 area = 0,2 block_length = minimum length figsize = 8,8 savefig = save image .. rubric:: Quick start After the parameters are modified properly, then run ``wgdi -bk total.conf`` .. rubric:: Example The original results are easily accessible at `wgdi-example `_ .. image :: _static/vvi161s_vvi161s.blockinfo.png :align: left